PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27978.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 234aa    MW: 25810.5 Da    PI: 7.2672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27978.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-1077124454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  A + + +L
  KHN27978.1  77 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAARMVTQL 124
                 6789**********************8...89************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.44973124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-676127No hitNo description
PfamPF000103.0E-877124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1177147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1278148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-779130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00397139171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVSPENSNWL FDYPLIDDDV IPVGDSSFAV SASTFSWPPP PANVSVEIDA SLGDSDGPKD  60
TALKKRARCD SSTASSSKAC REKLRRDRLN DKFVELGSIL EPGRPPKTDK AAILIDAARM  120
VTQLRDEALK LKDSNTSLQE KIKELKAEKN ELRDEKQRLK AEKEKLEMQV KSMNAQPAFL  180
PPPPAIPAAF APQGQAPGNK LMPFIRYPGV AMWQFMPPAT MDTSQDHVLR PPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973930.0BT097393.1 Soybean clone JCVI-FLGm-21P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149692.11e-145hypothetical protein PHAVU_005G091000g
SwissprotQ9FH371e-112ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0B2R7P81e-170A0A0B2R7P8_GLYSO; Transcription factor ILR3
STRINGGLYMA12G34300.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-97bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]